{
  "_id": "6a105f8bacfb0bcc41ca65d0",
  "Package": "ricu",
  "Title": "Intensive Care Unit Data with R",
  "Description": "Focused on (but not exclusive to) data sets hosted on\nPhysioNet (<https://physionet.org>), 'ricu' provides utilities\nfor download, setup and access of intensive care unit (ICU)\ndata sets. In addition to functions for running arbitrary\nqueries against available data sets, a system for defining\nclinical concepts and encoding their representations in tabular\nICU data is presented.",
  "Version": "0.6.3",
  "Authors@R": "c(\nperson(given = \"Nicolas\",\nfamily = \"Bennett\",\nrole = c(\"aut\", \"cre\"),\nemail = \"r@nbenn.ch\"),\nperson(given = \"Drago\",\nfamily = \"Plecko\",\nrole = c(\"aut\"),\nemail = \"drago.plecko@stat.math.ethz.ch\"),\nperson(given = \"Ida-Fong\",\nfamily = \"Ukor\",\nrole = c(\"aut\"),\nemail = \"ida-fong.ukor@monashhealth.org\")\n)",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "Language": "en-US",
  "URL": "https://github.com/eth-mds/ricu, https://physionet.org",
  "BugReports": "https://github.com/eth-mds/ricu/issues",
  "RoxygenNote": "7.3.2",
  "Additional_repositories": "https://eth-mds.github.io/physionet-demo",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "Config/pak/sysreqs": "libssl-dev libx11-dev",
  "Repository": "https://eth-mds.r-universe.dev",
  "Date/Publication": "2025-09-03 20:58:47 UTC",
  "RemoteUrl": "https://github.com/eth-mds/ricu",
  "RemoteRef": "HEAD",
  "RemoteSha": "c0efac720dbe72caaf63b361b6978a24383835bf",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-08 08:58:07 UTC",
    "User": "root"
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  "Author": "Nicolas Bennett [aut, cre],\nDrago Plecko [aut],\nIda-Fong Ukor [aut]",
  "Maintainer": "Nicolas Bennett <r@nbenn.ch>",
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  "_published": "2026-05-22T13:52:11.367Z",
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    "name": "ETH Medical data science",
    "description": "Medical data science at ETH Zürich"
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  "_devurl": "https://github.com/eth-mds/ricu",
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  "_assets": [
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    "extra/citation.json",
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    "extra/contents.json",
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    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
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    "manual.pdf"
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  "_realowner": "eth-mds",
  "_cranurl": true,
  "_releases": [
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      "version": "0.1.2",
      "date": "2020-11-03"
    },
    {
      "version": "0.1.3",
      "date": "2021-01-30"
    },
    {
      "version": "0.4.0",
      "date": "2021-05-20"
    },
    {
      "version": "0.5.0",
      "date": "2021-08-18"
    },
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      "version": "0.5.1",
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    },
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    },
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      "date": "2022-10-30"
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  "_exports": [
    "add_concept",
    "add_weight",
    "apply_map",
    "as_col_cfg",
    "as_concept",
    "as_id_cfg",
    "as_id_tbl",
    "as_item",
    "as_ptype",
    "as_src_cfg",
    "as_src_env",
    "as_src_tbl",
    "as_tbl_cfg",
    "as_ts_tbl",
    "as_win_tbl",
    "attach_src",
    "attached_srcs",
    "aumc",
    "auto_attach_srcs",
    "avpu",
    "binary_op",
    "bmi",
    "calc_dur",
    "cbind_id_tbl",
    "change_dur_unit",
    "change_id",
    "change_interval",
    "col_renamer",
    "collapse",
    "combine_callbacks",
    "comp_na",
    "concept",
    "concept_availability",
    "config_paths",
    "convert_unit",
    "data",
    "data_col",
    "data_dir",
    "data_var",
    "data_vars",
    "days",
    "default_vars",
    "delta_cummin",
    "delta_min",
    "delta_start",
    "detach_src",
    "do_callback",
    "do_itm_load",
    "downgrade_id",
    "download_src",
    "dt_gforce",
    "dur_col",
    "dur_unit",
    "dur_var",
    "eicu",
    "eicu_demo",
    "expand",
    "explain_dictionary",
    "fill_gaps",
    "first_elem",
    "fmt_msg",
    "gcs",
    "get_config",
    "get_itm_var",
    "get_target",
    "has_gaps",
    "has_no_gaps",
    "hirid",
    "hop",
    "hours",
    "id_col",
    "id_map",
    "id_map_helper",
    "id_orig_helper",
    "id_origin",
    "id_tbl",
    "id_var",
    "id_var_opts",
    "id_vars",
    "id_win_helper",
    "id_windows",
    "import_src",
    "import_tbl",
    "index_col",
    "index_var",
    "init_cncpt",
    "init_itm",
    "interval",
    "is_cncpt",
    "is_concept",
    "is_data_avail",
    "is_false",
    "is_id_tbl",
    "is_item",
    "is_itm",
    "is_regular",
    "is_sorted",
    "is_src_env",
    "is_src_tbl",
    "is_tbl_avail",
    "is_true",
    "is_ts_tbl",
    "is_unique",
    "is_val",
    "is_win_tbl",
    "item",
    "last_elem",
    "load_concepts",
    "load_dictionary",
    "load_difftime",
    "load_id",
    "load_src",
    "load_src_cfg",
    "load_ts",
    "load_win",
    "max_or_na",
    "merge_lst",
    "meta_vars",
    "mews_score",
    "miiv",
    "mimic",
    "mimic_demo",
    "min_or_na",
    "mins",
    "msg_progress",
    "n_tick",
    "new_cncpt",
    "new_concept",
    "new_item",
    "new_itm",
    "new_src_env",
    "new_src_tbl",
    "news_score",
    "norepi_equiv",
    "not_val",
    "pafi",
    "prepare_query",
    "qsofa_score",
    "rbind_id_tbl",
    "rbind_lst",
    "read_psv",
    "reclass_tbl",
    "remove_gaps",
    "rename_cols",
    "replace_na",
    "rm_cols",
    "rm_na",
    "safi",
    "secs",
    "sep3",
    "set_callback",
    "set_config",
    "set_target",
    "set_val",
    "setup_src_data",
    "setup_src_env",
    "sic",
    "sirs_score",
    "slide",
    "slide_index",
    "sofa_cardio",
    "sofa_cns",
    "sofa_coag",
    "sofa_liver",
    "sofa_renal",
    "sofa_resp",
    "sofa_score",
    "src_data_avail",
    "src_data_dir",
    "src_extra_cfg",
    "src_name",
    "src_prefix",
    "src_tbl_avail",
    "stay_windows",
    "subset_src",
    "supp_o2",
    "susp_inf",
    "tbl_name",
    "time_step",
    "time_unit",
    "time_vars",
    "transform_fun",
    "try_add_vars",
    "ts_tbl",
    "unclass_tbl",
    "unmerge",
    "upgrade_id",
    "urine24",
    "validate_tbl",
    "vaso_ind",
    "vaso60",
    "vent_ind",
    "weeks",
    "win_tbl",
    "write_psv"
  ],
  "_help": [
    {
      "page": "attach_src",
      "title": "Data attach utilities",
      "topics": [
        "attach_src",
        "attach_src.character",
        "attach_src.src_cfg",
        "detach_src",
        "setup_src_env",
        "setup_src_env.src_cfg"
      ]
    },
    {
      "page": "change_id",
      "title": "Switch between id types",
      "topics": [
        "change_id",
        "downgrade_id",
        "downgrade_id.id_tbl",
        "downgrade_id.ts_tbl",
        "upgrade_id",
        "upgrade_id.id_tbl",
        "upgrade_id.ts_tbl"
      ]
    },
    {
      "page": "data_env",
      "title": "ICU datasets",
      "topics": [
        "aumc",
        "data",
        "eicu",
        "eicu_demo",
        "hirid",
        "miiv",
        "mimic",
        "mimic_demo",
        "sic"
      ]
    },
    {
      "page": "file_utils",
      "title": "File system utilities",
      "topics": [
        "auto_attach_srcs",
        "config_paths",
        "data_dir",
        "get_config",
        "set_config",
        "src_data_dir"
      ]
    },
    {
      "page": "download",
      "title": "Data download utilities",
      "topics": [
        "download_src",
        "download_src.aumc_cfg",
        "download_src.character",
        "download_src.src_cfg"
      ]
    },
    {
      "page": "ts_utils",
      "title": "Time series utility functions",
      "topics": [
        "collapse",
        "expand",
        "fill_gaps",
        "has_gaps",
        "has_no_gaps",
        "hop",
        "is_regular",
        "remove_gaps",
        "slide",
        "slide_index"
      ]
    },
    {
      "page": "id_tbl",
      "title": "Tabular ICU data classes",
      "topics": [
        "as.data.frame.id_tbl",
        "as.data.table.id_tbl",
        "as_id_tbl",
        "as_ts_tbl",
        "as_win_tbl",
        "id_tbl",
        "is_id_tbl",
        "is_ts_tbl",
        "is_win_tbl",
        "ts_tbl",
        "validate_tbl",
        "win_tbl"
      ]
    },
    {
      "page": "tbl_meta",
      "title": "ICU class meta data utilities",
      "topics": [
        "data_col",
        "data_var",
        "data_vars",
        "dur_col",
        "dur_unit",
        "dur_var",
        "id_col",
        "id_var",
        "id_vars",
        "index_col",
        "index_var",
        "interval",
        "meta_vars",
        "time_step",
        "time_unit",
        "time_vars"
      ]
    },
    {
      "page": "import",
      "title": "Data import utilities",
      "topics": [
        "import_src",
        "import_src.aumc_cfg",
        "import_src.character",
        "import_src.src_cfg",
        "import_tbl",
        "import_tbl.tbl_cfg"
      ]
    },
    {
      "page": "load_concepts",
      "title": "Load concept data",
      "topics": [
        "load_concepts",
        "load_concepts.character",
        "load_concepts.cncpt",
        "load_concepts.concept",
        "load_concepts.fct_cncpt",
        "load_concepts.integer",
        "load_concepts.item",
        "load_concepts.itm",
        "load_concepts.lgl_cncpt",
        "load_concepts.numeric",
        "load_concepts.num_cncpt",
        "load_concepts.rec_cncpt",
        "load_concepts.unt_cncpt"
      ]
    },
    {
      "page": "concept_dictionary",
      "title": "Load concept dictionaries",
      "topics": [
        "concept_availability",
        "explain_dictionary",
        "load_dictionary"
      ]
    },
    {
      "page": "load_tbl",
      "title": "Load data as 'id_tbl' or 'ts_tbl' objects",
      "topics": [
        "load_id",
        "load_id.character",
        "load_id.default",
        "load_id.fun_itm",
        "load_id.itm",
        "load_id.src_tbl",
        "load_ts",
        "load_ts.character",
        "load_ts.default",
        "load_ts.fun_itm",
        "load_ts.itm",
        "load_ts.src_tbl",
        "load_win",
        "load_win.character",
        "load_win.default",
        "load_win.fun_itm",
        "load_win.itm",
        "load_win.src_tbl"
      ]
    },
    {
      "page": "load_src",
      "title": "Low level functions for loading data",
      "topics": [
        "load_difftime",
        "load_difftime.aumc_tbl",
        "load_difftime.character",
        "load_difftime.eicu_tbl",
        "load_difftime.hirid_tbl",
        "load_difftime.miiv_tbl",
        "load_difftime.mimic_tbl",
        "load_difftime.sic_tbl",
        "load_src",
        "load_src.character",
        "load_src.src_tbl"
      ]
    },
    {
      "page": "load_src_cfg",
      "title": "Load configuration for a data source",
      "topics": [
        "load_src_cfg"
      ]
    },
    {
      "page": "utils",
      "title": "Utility functions",
      "topics": [
        "first_elem",
        "is_false",
        "is_true",
        "is_val",
        "last_elem",
        "max_or_na",
        "min_or_na",
        "not_val"
      ]
    },
    {
      "page": "cli_output",
      "title": "Message signaling nested with progress reporting",
      "topics": [
        "fmt_msg",
        "msg_progress"
      ]
    },
    {
      "page": "data_concepts",
      "title": "Data Concepts",
      "topics": [
        "as_concept",
        "concept",
        "init_cncpt",
        "init_cncpt.cncpt",
        "init_cncpt.fct_cncpt",
        "init_cncpt.num_cncpt",
        "init_cncpt.rec_cncpt",
        "init_cncpt.unt_cncpt",
        "is_cncpt",
        "is_concept",
        "new_cncpt",
        "new_concept"
      ]
    },
    {
      "page": "data_items",
      "title": "Data items",
      "topics": [
        "as_item",
        "init_itm",
        "init_itm.col_itm",
        "init_itm.fun_itm",
        "init_itm.hrd_itm",
        "init_itm.itm",
        "init_itm.rgx_itm",
        "init_itm.sel_itm",
        "is_item",
        "is_itm",
        "item",
        "new_item",
        "new_itm"
      ]
    },
    {
      "page": "callback_cncpt",
      "title": "Concept callback functions",
      "topics": [
        "avpu",
        "bmi",
        "gcs",
        "norepi_equiv",
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